PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0019s0162.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 903aa    MW: 98504.7 Da    PI: 6.752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0019s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19328427198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kalax.0019s0162.1.p 328 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 414
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kalax.0019s0162.1.p 415 RdPGGKLVIGSRK 427
                          4499999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-29323428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-20325425IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-23326423No hitNo description
PROSITE profilePS5086311.462328429IPR003340B3 DNA binding domain
SMARTSM010192.3E-20328428IPR003340B3 DNA binding domain
PfamPF023622.9E-16328427IPR003340B3 DNA binding domain
PROSITE profilePS5105013.487584634IPR011124Zinc finger, CW-type
PfamPF074967.8E-8589631IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC  60
DSCKKPIHCG CASSKPFIEF LDLGGACCTT CLKISGQHAN RGDEVSNDHS VQVLSNVGGL  120
QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS  180
SNFLNLNSQS VGSPHFYIAG SNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV  240
VEGRELIKLP SPFQQSQRSR VILPKPSKCG LSLSADASKG MVQQPRVARP PAEGRGRNQL  300
LPRYWPRITD QELQQLSGDL NSPVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQS  360
EGTPIRIQDA KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRRDPGGK  420
LVIGSRKASI SSDTQDGDIA ALANGAHGES SFSDVSAACG YSGTFQSMAK NRDTHMHALP  480
EQMTVADINL GWSKNNRHRG RIIESPIQKS MVKRPKNISS KSRRLLLHAE DVLELKLTWD  540
EAQDLLRAPP SIKPSIVTVE DHEIEEFEEP PVLAKKTIFT VGASGGQEQW AQCDFCSKWR  600
RLPVDVLLPL KWTCAENFWD SCRCSCSVPD EVGAKELENL LKHGKDLKRP RTLENHKLVQ  660
DHEPSGLDAL ASAAVLGDNA GEAGETSVGA TTKHPRHRPG CTCIVCIQPP SGKGKHHPTC  720
TCNVCMTVKR RFKTLMFRKR IRQSEREAEV SQKEPVLPKE NYELTNLKGD SRHEMLQSHP  780
VEADADRTTQ NLVQVDQSSD NSDRQLDLNS HPNRGSKCLE QEMNAAVSMT RLVHAAVLPL  840
ESHLKQHGLA NSTLDASGPP QTIEEGDYGV ADEDDTVQSG SDIKDEDRSS HANQDQNVDE  900
KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1432741413102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017086.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
RefseqXP_007017087.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2